record_number -> admin.record_number (name)
what_was_the_first_surveil -> admin.first_record_number (name)
ac_study_number -> admin.consented_record_number (study_id)
nhs_number -> admin.patient_identifier (ppi)
duplicate -> admin.duplicate (yesno)
enrollment_date -> admin.enrollment_date (date)
admission_type -> admission.admission_route (list)
study_year -> admin.study_year (name)
file -> admin.data_file (name)
week_number -> admin.week_number (name)
c19_diagnosis -> diagnosis.standard_of_care_COVID_diagnosis (list)
clinical_radio_diagnosis -> diagnosis.clinical_or_radiological_LRTI_or_pneumonia (yesno)
c19_adm_swab -> diagnosis.admission_swab (list)
c19_test_type -> diagnosis.test_type (list)
qualifying_symptoms_signs -> diagnosis.qualifying_symptoms_signs (name)
cc_critieria -> diagnosis.meets_case_control_criteria (yesno)
cc_pos_date -> diagnosis.first_COVID_positive_swab_date (date)
gender -> demog.gender (list)
age_at_admission -> demog.age (double)
age_march -> demog.age_in_march_2021 (double)
imd -> demog.imd_decile (name)
gp_practice -> admin.gp_practice_old (name)
gp_practice_drop_down -> admin.gp_practice (list)
smoking -> demog.smoker (list)
ethnicity2 -> demog.ethnicity (list)
care_home -> demog.care_home_resident (yesno)
hapcovid_screening -> admission.non_lrtd_hospital_acquired_covid (yesno)
hospital_covid -> admission.hospital_acquired_covid (yesno)
drugs -> demog.no_drug_abuse, demog.alcohol_abuse, demog.ivdu_abuse, demog.marijuana_abuse, demog.other_inhaled_drug_abuse (checkboxes)
vaping -> demog.vaping (list)
alc_units -> demog.units_of_alcohol (name)
np_swab -> admin.np_swab_taken_1 (list)
adm_np_type -> admin.np_swab_site_1 (list)
np_date -> admin.np_swab_date_1 (date)
days_adm_npswab -> admin.np_swab_day_since_admission (double)
np_swab_2 -> admin.np_swab_taken_2 (list)
adm_np_type_2 -> admin.np_swab_site_2 (list)
np_date_2 -> admin.np_swab_date_2 (date)
np_swab_3 -> admin.np_swab_taken_3 (list)
adm_np_type_3 -> admin.np_swab_site_3 (list)
np_date_3 -> admin.np_swab_date_3 (date)
saliva -> admin.saliva_sample_taken (list)
saliva_date -> admin.saliva_sample_date (date)
days_adm_saliva -> admin.saliva_sample_day_since_admission (double)
sputum -> admin.sputum_sample_taken (list)
sputum_date -> admin.sputum_sample_date (date)
days_adm_sputum -> admin.sputum_sample_day_since_admission (double)
pt_ad_ur -> admin.urine_sample_needed (yesno)
adm_ur_taken -> admin.urine_sample_taken (list)
nourine_reason -> admin.urine_sample_failure_reason (list)
adm_np_type_2 -> admin.urine_sample_site (list)
adm_ur_date -> admin.urine_sample_date (date)
days_adm_urine -> admin.urine_sample_day_since_admission (double)
adm_serum_tak -> admin.serum_sample_taken (list)
adm_seru_date -> admin.serum_sample_date (date)
days_adm_serum -> admin.serum_sample_day_since_admission (double)
contraindication -> vaccination.covid_vaccine_contraindicated (yesno)
covid19_vax -> vaccination.covid_vaccination (list)
covidvax_date -> vaccination.first_dose_date (date)
covidvax_dose_2 -> vaccination.second_dose_date (date)
covidvax_dose_3 -> vaccination.third_dose_date (date)
covidvax_dose_4 -> vaccination.fourth_dose_date (date)
covidvax_dose_5 -> vaccination.fifth_dose_date (date)
covidvax_dose_6 -> vaccination.sixth_dose_date (date)
brand_of_covid19_vaccinati -> vaccination.first_dose_brand (list)
covid19vax_brand_2 -> vaccination.second_dose_brand (list)
covid19vax_brand_3 -> vaccination.third_dose_brand (list)
covid19vax_brand_4 -> vaccination.fourth_dose_brand (list)
covid19vax_brand_5 -> vaccination.fifth_dose_brand (list)
covid19vax_brand_6 -> vaccination.sixth_dose_brand (list)
c19vaxd1_adm -> admission.time_since_first_vaccine_dose (name)
c19vaxd2_adm -> admission.time_since_second_vaccine_dose (name)
c19vaxd3_adm -> admission.time_since_third_vaccine_dose (name)
c19vaxd4_adm -> admission.time_since_fourth_vaccine_dose (name)
c19vax5_adm -> admission.time_since_fifth_vaccine_dose (name)
c19vax6_adm -> admission.time_since_sixth_vaccine_dose (name)
flu_date -> vaccination.last_flu_dose_date (date)
fluvax_adm_d1 -> admission.time_since_last_flu_vaccine_dose (name)
ppv23_date -> vaccination.last_pneumococcal_dose_date (date)
ppv23vax_adm_d -> admission.time_since_last_pneumococcal_vaccine_dose (name)
c19_variant -> genomic.variant (variant)
year -> admission.year (double)
study_week -> admission.study_week (double)
admission_date -> admission.date (date)
hospital -> admin.hospital, toupper (text_to_factor)
adm_diagnosis -> admission.presumed_CAP_radiologically_confirmed, admission.presumed_CAP_clinically_confirmed, admission.presumed_CAP_no_radiology, admission.presumed_LRTI, admission.presumed_Empyema_or_abscess, admission.presumed_exacerbation_COPD, admission.presumed_exacerbation_non_COPD, admission.presumed_congestive_heart_failure, admission.presumed_non_infectious_process, admission.presumed_non_LRTI (checkboxes)
ics -> admission.on_inhaled_corticosteroids (yesno)
immsup -> admission.on_immunosuppression (yesno)
psi_class -> admission.pneumonia_severity_index_class (list)
crb_test_mai -> admission.curb_65_severity_score (list)
news_2_total -> admission.news2_score (name)
pulse_ox -> admission.oximetry (name)
rr -> admission.respiratory_rate (name)
fio2 -> admission.max_oxygen (name)
systolic_bp -> admission.systolic_bp (name)
diastolic_bp -> admission.diastolic_bp (name)
hr -> admission.heart_rate (name)
temperature -> admission.temperature (list)
symptom_days_preadmit -> admission.duration_symptoms (double)
previous_infection -> admission.previous_covid_infection (yesno_unknown)
previousinfection_date -> admission.previous_covid_infection_date (date)
c19d_preadm -> admission.time_since_covid_diagnosis (name)
rockwood -> admission.rockwood_score (name)
cci_total_score -> admission.charlson_comorbidity_index (name)
height -> admission.height (name)
weight -> admission.weight (name)
bmi -> admission.BMI (double)
first_radio -> admission.cxr_normal, admission.cxr_pneumonia, admission.cxr_heart_failure, admission.cxr_pleural_effusion, admission.cxr_covid_changes, admission.cxr_other (checkboxes)
c19_peep -> day_7.max_peep (name)
c19_hospadm -> day_7.length_of_stay (list)
c17_high -> day_7.max_care_level (list)
c19icuon -> day_7.still_on_icu (yesno)
c19_icudays -> day_7.icu_length_of_stay (list)
c19_vent -> day_7.max_ventilation_level (list)
c19_ox -> day_7.max_o2_level (list)
c19_ionotropes -> day_7.ionotropes_needed (yesno)
c19_complication -> day_7.PE, day_7.DVT, day_7.ARF, day_7.NSTEMI, day_7.STEMI, day_7.cardiac_failure, day_7.new_AF, day_7.new_other_arrythmia, day_7.inpatient_fall, day_7.other_complication, day_7.no_complication (checkboxes)
c19_death7d -> day_7.death (yesno)
c19_meds -> treatment.dexamethasone, treatment.remdesevir, treatment.tocilizumab, treatment.sarilumab, treatment.in_drug_trial, treatment.no_drug_treatment, treatment.sotrovimab (checkboxes)
hospital_length_of_stay -> outcome.length_of_stay, floor (integer)
survival_days -> outcome.survival_duration, round (integer)
ip_death -> outcome.inpatient_death (yesno)
days_in_icu -> outcome.icu_duration (double)
did_the_patient_have_respi -> outcome.respiratory_support_needed (yesno)
number_of_days_of_ventilat -> outcome.ventilator_duration (double)
ett_days -> outcome.endotracheal_tube_duration (double)
renal_replacement_therapy -> outcome.renal_support_duration (double)
complications -> outcome.acute_renal_failure, outcome.liver_dysfunction, outcome.hospital_acquired_infection, outcome.acute_respiratory_distress_syndrome, outcome.NSTEMI, outcome.STEMI, outcome.new_AF, outcome.new_other_arrhthmia, outcome.stroke, outcome.DVT, outcome.PE, outcome.heart_failure, outcome.fall_in_hospital, outcome.reduced_mobility, outcome.increasing_care_requirement, outcome.no_complications (checkboxes)
ventilatory_support -> outcome.highest_level_ventilatory_support (list)
did_the_patient_receive_ec -> outcome.received_ecmo (yesno)
inotropic_support_required -> outcome.received_ionotropes (yesno_unknown)
lrtd_30d_outcome -> outcome.functional_status (list)
survive_1yr -> outcome.one_year_survival (yesno)
survival_1yr_days -> outcome.one_year_survival_duration (integer)
yr_survival_complete -> outcome.one_year_survival_complete (list)
fever2 -> symptom.abnormal_temperature (yesno)
pleurtic_cp -> symptom.pleuritic_chest_pain (yesno)
cough2 -> symptom.cough (yesno)
sput_prod -> symptom.productive_sputum (yesno)
dyspnoea -> symptom.dyspnoea (yesno)
tachypnoea2 -> symptom.tachypnoea (yesno)
confusion -> symptom.confusion (yesno)
anosmia -> symptom.anosmia (yesno_unknown)
ageusia -> symptom.ageusia (yesno_unknown)
dysgeusia -> symptom.dysguesia (yesno_unknown)
fever -> symptom.fever (yesno_unknown)
hypothermia -> symptom.hypothermia (yesno_unknown)
chills -> symptom.chills (yesno_unknown)
headache -> symptom.headache (yesno_unknown)
malaise -> symptom.malaise (yesno_unknown)
wheeze -> symptom.wheeze (yesno_unknown)
myalgia -> symptom.myalgia (yesno_unknown)
worse_confusion -> symptom.worsening_confusion (yesno_unknown)
general_det -> symptom.general_deterioration (yesno_unknown)
ox_on_admission -> symptom.oxygen_required_on_admission (yesno_unknown)
resp_disease -> comorbid.no_resp_dx, comorbid.copd, comorbid.asthma, comorbid.resp_other (checkboxes)
other_respiratory_disease -> comorbid.bronchiectasis, comorbid.interstitial_lung_dx, comorbid.cystic_fibrosis, comorbid.pulmonary_hypertension, comorbid.chronic_pleural_dx, comorbid.other_chronic_resp_dx (checkboxes)
chd -> comorbid.no_heart_dx, comorbid.ccf, comorbid.ihd, comorbid.hypertension, comorbid.other_heart_dx (checkboxes)
mi -> comorbid.previous_mi (yesno)
other_chd -> comorbid.congenital_heart_dx, comorbid.af, comorbid.other_arrythmia, comorbid.pacemaker, comorbid.valvular_heart_dx, comorbid.other_other_heart_dx (checkboxes)
diabetes -> comorbid.diabetes (list)
dm_meds -> comorbid.diabetes_medications (list)
neurological_disease -> comorbid.neuro_other, comorbid.cva, comorbid.tia, comorbid.hemiplegia, comorbid.paraplegia, comorbid.no_neuro_dx (checkboxes)
dementia -> comorbid.no_dementia, comorbid.dementia, comorbid.cognitive_impairment (checkboxes)
cancer -> comorbid.solid_cancer (list)
haem_malig -> comorbid.no_haemotological_cancer, comorbid.leukaemia, comorbid.lymphoma (checkboxes)
ckd -> comorbid.ckd (list)
liver_disease -> comorbid.liver_disease (list)
gastric_ulcers -> comorbid.gastric_ulcers (yesno)
pvd -> comorbid.periph_vasc_dx (yesno)
ctd -> comorbid.connective_tissue_dx (yesno)
immunodeficiency -> comorbid.immunodeficiency (yesno)
other_pn_disease -> comorbid.other_pneumococcal_risks (yesno)
transplant -> comorbid.transplant_recipient (yesno)
pregnancy -> comorbid.pregnancy (list)
hiv -> comorbid.no_HIV, comorbid.HIV, comorbid.AIDS (checkboxes)
final_soc_lrtd_diagnosis -> diagnosis.SOC_CAP_radiologically_confirmed, diagnosis.SOC_CAP_clinically_confirmed, diagnosis.SOC_CAP_no_radiology, diagnosis.SOC_LRTI, diagnosis.SOC_Empyema_or_abscess, diagnosis.SOC_exacerbation_COPD, diagnosis.SOC_exacerbation_non_COPD, diagnosis.SOC_congestive_heart_failure, diagnosis.SOC_non_infectious_process, diagnosis.SOC_non_LRTI (checkboxes)
covid_19_diagnosis -> diagnosis.covid_19_diagnosis (list)
ppv23 -> vaccination.pneumovax (list)
flu_vaccine -> vaccination.influenza_vaccination (list)
abx_14d_prior -> admission.pre_admission_antibiotics_given (yesno_unknown)
antibiotic_used -> admission.pre_admission_antibiotic (checkboxes_to_nested_list)
antiplatelets -> admission.antiplatelet_therapy (list)
anticoagulants -> admission.anticoagulant_therapy (list)
statins -> admission.cholesterol_lowering_therapy (list)
hypertensives -> admission.antihypertensive_therapy (list)
antiviral_14d_prior -> admission.pre_admission_antiviral (checkboxes_to_nested_list)