Create presumed diagnostic categories

Pneumonia if one of:

• Initial diagnosis of CAP (supported by initial radiology or clinically)

• Empyema or abscess

Usage

derive_presumed_diagnosis_categories(df, v)

Arguments

df

the dataframe.

v

the value set. usually precomputed by the augment framework the value set can be explicitly supplied with v = get_value_sets(df)

Value

a dataframe

Details

Presumed clinical presentation:

• Pneumonia - implies Infective

• NP-LRTI - implies Infective

• No evidence LRTI (include CRDE and HF)